PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5207981 (565 amino acids)

SeqID: 5207981 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027906: Putative sulfate transporter ychM]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5207981
MFSAVKKSISAKPSFQEIQTNILAGLTVGVIALPLSMALAIASGVPPQHGLYTAMIAGIV
IALCGGSKVNISGPTAAFVVILLPIVQQFGLGGLLLSGLMAGVILLLMGLGKLGKLIEIV
PYPVTVGFTAGIGVVIATFQIKDFFGLEVAAGGEHYLEKLSYILQALTSISWQETLIGAL
TLAVLLAWPKLKSKVPAHLAALLVGALIAWVMTQMIGGFSVATIGSRFHYELDGLLGSGI
PPIMPSFEWPWNLPGADGQPIGMSFELVRELLPSAITIAILGALESLLCAVVADGMSGKK
HNPNDELIGQGLGNILVPLFGGIPATAAIARTAANVKAGGSMPLASVVHGLFILAGILLL
APLLSYIPMASMAALLLVVAWNMSEAKHFVRTLKVAPRDDVLILVLCFALTVLFDMTIAV
AVGMGLAAMLFIRRSISLTDARAVETNHQAYEVPESVVVYDINGPLFFGSAHKALKTIAL
VRPDVRVVILDMSEVTLLDMSAIVAMESIAQDLSGKQVALIINNLQPRMLLKLRRAGIRK
RRGQVEYARTMDDSFALAQRMTAQA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory