PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208227 (423 amino acids)

SeqID: 5208227 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 77416590: Serine transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208227
MQNEATISDVNLAQRQGWTRSDTTWMLSLFGTAVGAGILFLPINAGMGGFWPLVLMAVII
GPMTYLAHRGLSRFVCSSQRQGSDITHVVEEYFGVGAGKAITLLYFFAIYPIVLIYGVGI
TNTVDSFIVNQLGMASPPRFLLSGILVLGMMSVMVSGEKFMLKVTQLLVYPLVGILAFMS
LYLIPSWKMDALMEVPAAGEFLGTVWLTIPVLVFAFNHSPAISQFSVSLKKQYGSNAAKK
ADVILRNTSMMLVGFVMLFVFSCVLSLSPAQLAEAKAQNLPILSYLANVHASGFVSYFGP
IIAVIAIVSSFFGHYLGATEGLKGIITKQLRSSNKEVSDAKIDKFILGFMFLTIWGVAVI
NPSILGMIEALGGPIIAAILYLMPMYAVYKVPALKAYRGRISNILVILAGLLAMTAILFG
MLS