PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208389 (763 amino acids)

SeqID: 5208389 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597444: 2-oxoisovalerate dehydrogenase (beta subunit)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208389
MEDRAIALDRQFVERVSQQDFLEIEQGWCHTRLGLSDADFVGIFESQMKSRLLDLESRKM
RARNQGFYTIGSSGHEGNAACAAALRPTDMAFLHYRSAAFMIERARQVPGETSLWDMLLS
FAASSEDPISGGRHKVLGSKRLMIPPQTSTIASHLPKAVGAALSIPLTHRLDIDSALPED
SLVFCNFGDASANHASAQTAINAAGWAAYQQVPLPLLFVCEDNGIGISTATPNGWIAANF
KDRAGIKYFYCDGRDLLDCYRVSRQAAEYARVKRKPVFLHVRTVRLMGHAGSDAEIAYLS
KQKIFDNEAQDPLLLSAKQIIEAKLMSPDEIINQYQTLKARIAAIAMVAVERPKLTSAKA
AMAAVIPPVNDKPLTHHNLTDEAFAQLFSADKNSLGKPLHMGKLINMTLTELMARQQNIV
VCGEDVGKKGGVYHVTSRLVERFGPNRVINTLLDETSILGLAIGMAHNGLLPIPEIQFLA
YVHNAEDQIRGEAATLPFFSNGQFSNPMVIRIAGLGYQKGFGGHFHNDNSLAVFRDIPGL
ILACPSNGADAMGMLRECVRLAEQEQRLVIFLEPIALYMTRDLHEEGDGLWSHDYCPQEK
AKALPYGELGVYGKGKTLAILSYGNGYYLSRQAERELSKLGIDCRVIDLRYLIPLNEEAI
IAAVSECEHLLIVDECRRSGSVSEAIVTCVHERLGDLAPQMARLTAEDCFIPLAEAATLP
LPSRSQIVEAALALVGEQALVGEHAVDDEGSETIQDAGVRQVL