PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208454 (446 amino acids)

SeqID: 5208454 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208454
MEDFNKADQVATGTLEHYWMPFTANRQFKQSPRLLAQAEGMYYKDVNGRPVLDGTAGLWC
CNAGHGRKAISEAVSKQIHEMDYAPSFQMGHPLAFELAERLAAIAPKGINKVFFTNSGSE
SVDTALKIALNYHRARGEATRTRFIGRELGYHGVGFGGISVGGIGGNRRTFSQQLLQGVD
HLPHTLDIQQNAFCKGLPETGAEKAEVLEQLVTLHGAENIAAVIVEPMSGSAGVILPPQG
YLKRLREITRKYGILLIFDEVITGFGRVGDAFASQRWGVTPDMITTAKALNNGTIPMGAV
LIDDAIYDASMDAPEGAIELYHGYTYSGHPVAAAAAIATLDIYQEEQLFERTKSLEGYFE
KAVHSLKGLPNLIDIRNTGLVAGIQFSPSDKGIGKRGFGIFETCFKNGTLVRATADTIAL
SPPLIVDEAQIDQMVNTLSDAITTVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory