PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208457 (434 amino acids)

SeqID: 5208457 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600502: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208457
MTTKRPVHSDQYPDSFYHATANALEALPQLKERISADVCIVGGGFSGINTAIELAERGFE
VVLLEAKRIGWGASGRNGGELIRGIGHNVEQFRNEIGSEGVEAIERMGFEAVEIVRNRVA
KHNIDCNLQMGYCDLATKPRHMKELAADYQEMLHQGREGFKLLEKHQLGEVIGSDLYCGA
LVDMNSGHLHPLNLALGEAKVARSLGVKMFEYSAATKIVKGERPCVHTEHGRVDCRYLVL
AGNAYIGHELNGYIGGKVLPAGSYLLATEPLSQEMCDEIIPQNMAFADMRIDLDYFHLSQ
DNRLLFGGLCTYSGKDPKDIDAALRPNLEKVFPQLKGVKIEYEWGGMIGIGANRLPQIGR
LPDCPNILYAQAYAGHGVNATHMAARLIGEALTAQAERFDIFDRVQHMTFPGGPRFRSPM
LAAGMLYHRLKDLF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory