PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208460 (449 amino acids)

SeqID: 5208460 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595493: probable glutamine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208460
MKKLIDYLKANKITEVECVISDMTGIARGKIAPVDKFIDEKGMRLPESVLLQTVTGDYVD
DDLYDSLLDKADIDFVCVPDENAVFMLPWTVEATAQVIHDTFDKMGNPIELSPRNLLKKV
LKLYEDKGWKPVIAPEMEFYLTHRNSDPDMPLIPPVGRSGRKESGRQSFSIDAANEYDPL
FEDMYDWCEAQGLDIDTLIHEEGTAQMEINFSHGDALSLADQVFVFKRTLREAALKHDVC
ATFMAKPVTDEPGSAMHIHQSVVDIKTGKNIFTNEDGTKSAKFLCYIGGLQKYIPELLPL
MAPNVNSFRRFLPGTSAPVNLEWGDENRTCGLRIPESSPQNRRIENRIAGADANSYLAIA
ATLLCGYMGMVEDVKPSTPVQGRANENRQGISLPLTLEEALAVMSESSAVREYLGDTFTS
GYIAVKQADLENFRRVISSWEREFLLLTV