PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208501 (428 amino acids)

SeqID: 5208501 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599283: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208501
MTRSETLFEQAKKTIPGGVNSPVRAFNGVGGSPRFIEKADGAYIYDADGKAYIDYVGSWG
PMILGHNHPKIRQAVLDAVENGLSFGAPTELEVRMAEKVIEMVPSMEQVRMVSSGTEATM
SAIRLARGFTNRDKILKFEGCYHGHADCLLVKAGSGALTLGQPSSPGIPEDFAKHTLTAV
YNELESVKTLFEQYPEEIACIILEPVAGNMNCIPPIPGFLEGLRALCDQYGALLIIDEVM
TGFRVSKSGAQGHYGITPDLTTLGKVIGGGMPVGAFGGRKEVMQFIAPTGPVYQAGTLSG
NPIAMSAGLAQMEELCAEGLYEELAAKTKRIAEGFKAAANKHGIPLSINYVGGMFGFFFT
ELEQVTRFDQVTQCDAEAFRTFYHGMLDEGVYLAPSAYEAGFLSMAHGEKELEETLAAAD
RVFARMAK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory