PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208557 (384 amino acids)

SeqID: 5208557 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 267186: T-protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208557
MEHAQMSEKTTNELEKLREHIDSVDQQLLHLLRKRLDLVAQVGGVKHAAGVPIYAPQREA
SMLAKRREEAAKMNVSPQLIEDILRRLMRESYLNEKDVGFKQVKTDLGHVVIVGGQGKLG
GLFAQMLSLSGYQVKSLDKDDWQQADAIFDGAGMVIVTVPISITCELIRDKLTSLPSSCI
LADLTSIKEKPLEAMLASHQGPVVGLHPMFGPDVGSLAKQVVVVCHGRGREQYEWLLEQI
GIWGARLVEADAQQHDKAMQLVQAMRHFSSFVYGLNLYREAADIDNLLQFSSPIYRLELA
MVGRLFAQSPELYADIIFAQQESLTAIGDYLDNYAQALELLKRGDRQGFIREFEEVAAWF
GDFAPQFQRESRAMLQSVNDMKTG