PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208648 (545 amino acids)

SeqID: 5208648 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 130753: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208648
MNKKLLVLSLAAILGLAACGSDGDNGKDGTAGTPGTDGSNGTNGKDWTGVNQWYVDGQNR
VTKASGMTNNNEAGAAKNIILFVGDGMGVSTVTAARILDGQLKGQTGEENSLSFETLPHL
GLAKTYNVDGQTPDSAGTMTAMVTGVKTDVGVISQGEGVERGVCSSTTGQDLVTSLELAA
MAGMSTGVVSTARITHATPAATYAHVPERDWEADSNLPAEAVTNGCKDIAAQMLDFNDGK
GINVVMGGGRRAFIPNTTVDPEGKAGKRKDGRDLTAEWMAQYPNAAYVTDRDSFLAMDTS
TTEHALGLFNSSHMEYDYDRVEDGVNGEPSLAEMTAKSIDILSKNDKGFVLIVEAGRIDH
AHHAGNAARALHDTIALSEAVRVAMEKTSANDTLLMVTADHSHVFTIAGYPTRGNPILGL
VKSNDSNGQPSVTNSTDANGMPYTTVGYANGLGFGSLETGGDERYNYAAEPGRVDLNYID
TQSAGFHQEALVPLESETHAGEDVAIFARGPGASLVEGTVEQNHIFHVMNYAGDLVKKAE
AAAAQ