PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208937 (328 amino acids)

SeqID: 5208937 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208937
MKLASYNNGRRDGQLMLVSKDLTKAVAVPAIAHTMQQLLDAWDLLQPQLQELYEALNQGV
LDNTVDFDENKCLSPLPRAYQWADGSAYVNHVELVRKARGAEMPETFWTDPLVYQGGSDS
FIAPKADIELASEEWGIDFESEVAVITDDVPMGIDAESAEKHIKLLMLVNDVSLRNLIPA
ELAKGFGFFQSKPSSSFSPVAVTPDELGDKWHESKVHLPLITHLNNELFGKPNCGIDMTF
NFSQLIAHFTKTRPLGAGAIIGSGTISNYDRSAGSSCLAETRMLETISDGKPSTSFMRFG
DRVRIEMLDENEQSIFGAIDQQVVEYKG