PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208954 (469 amino acids)

SeqID: 5208954 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 118595554: Glutamyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208954
MTIKTRFAPSPTGFLHVGGARTALYSWLYARANQGEFVLRIEDTDLERSTPEACAAILEG
MEWLGLNWDEGPYYQTKRFDRYNEIIAQMLEQGTAYKCYCSRERIEAMREEQAAKGEQQK
YDGCCRDKAPRDTDEPFVVRFKNPTEGSVVFDDHVRGRIEISNELLDDLIIARTDGTPTY
NFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALNAPVPEYAHVAMILGDDGAKLSKR
HGAVGVMQYRDDGYLPEALLNYLVRLGWSHGDQEVFSIEEMKQYFKLDDINKAASAFNTE
KLIWLNQHYMKELAPEYVAKHLEWHMQDQNIDTANGPALAEVVSALAERAKTLKELAASS
RYFYEDFAEFDETAAKKHLRGVALEPLQLLQKKFAELSEWNVEAIHQAIEATAAELELGM
GKVGMPLRVAVTGAGMSPAVDLTAFLVGKARCEQRISKAIEFVANRINS