PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208972 (407 amino acids)

SeqID: 5208972 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027966: Inner membrane symporter ygjU]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208972
MNQNRSLFAKLADGSLVLQIILGIIAGVALASFSPSSAESVAFLGDLFVGALKAIAPILV
FILVAASIANQKKNTKTNMRPIIVLYLFGTFAAAITAVTMSFLFPTSLVLVSGAQGATPP
EGIGEVLNTLLFKVVDNPVNALMTGNYIGILAWGVGLGIALHHASENTKTVFADVSHGVS
QMVRFVIRLAPIGIFGLVANTFAATGFEAIAGYAQLLAVLLGSMLIIALIINPLIVWFKI
RRNPYPLVFTCLRESGVTAFFTRSSAANIPVNMALCEKLDLHEDTFSVSIPLGATINMAG
AAITITVLTLAAVHTEGIQVDILTAILLSVVAAVSACGASGVAGGSLLLIPLACSLFGIS
NDVAMQVVAVGFIIGVIQDSAETALNSSTDVLFTAAACEAAERQAEI