PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209405 (707 amino acids)

SeqID: 5209405 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209405
MSCTSTHLTSHQASPHSRSQPRSPFPTTLSALTLAIAATGMMLPSTGLAKTISLTSPDKQ
IVVSLSDDDQTPRYSVSFHGKKVIEPSKLGIVFESLGEFGTDFSIQEVKRSQADERWQQP
WGEREWVVDKHNGLTATLSNGQYRFVVEFKVFDDGLGFRYQMPKQGDLDKLNITSELTEF
TLPQPENVTAWWIPARGWNRYEYLYQKTPLKQVDRVHTPFTFTLSDGVHMSIHEAALVDY
AAMTLDQRRDGTLRADLTPWSDGMRVKTQAGFSTPWRTIQIADKATGLLNSDLILNLNEP
NKLGDVDWVEPGKYVGIWWGMHLNENTWGSGDKHGATTSETKRYMDFAAENGFAGVLVEG
WNIGWDGSWFHNGDVFSFTQAYPDFDLPEISAYGASKGVRLIGHHETSGSVTNYRKQMSD
AYDLYQQYGVTQVKTGYVADGGDIKRVDEQGIVRHEWHDGQFMVNEYLHSVTEAAKRHIS
INTHEPIKDTGLRRTYPNWIAREGARGQEFNAWGTPPNNPSHTTTLAYTRMLAGPMDFTP
GIFDLAPKGLDAVNRVQTTLTKQLALYVVLYSPIQMAADLPRNYKQHPDAFKFIRDVPTD
WAQSIALAGEVGEYVAFARQERGGKSQGKDWYLGAITDDDAREINIKLDFLDPALSYEVQ
IYRDGDKADWRTNPYDYVIETQKVNSKQQLTLKLASSGGVAIRFKAL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory