PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209432 (477 amino acids)

SeqID: 5209432 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209432
MDFSSTQGVALQKLDWQLSTIEVFDCFAHLPWAILLDSAGADHIDARYDIISFDPLATIT
SQDGVTHTRHLRPTAASATEENQSKDGVEISQDDPLSILQAAIADYFPTQHACELPFSGG
ALGTFSYDLGRRIEKLPTIAAQDIELPEMNIGLYDWALLFCYQSQTWSLVHYRGETALKE
RLADLEARLSSPSNEKANGEKFALSRDWQPQITKGEYRDKFDRVQDYLHSGDCYQINLTQ
RFEAEYRGDEWQAYLKLRASNKAPFSAFIRLDMHAILSISPERFIKLKGDAIETKPIKGT
MARSSDATADKAAAEALAASEKDRAENLMIVDLLRNDIGKVASPGSVRVPHLFAIESFPA
VHHLVSTVTANLAAPNSPCDLLRAAFPGGSITGAPKIRAMEIIEELEPSRRSLYCGSIGY
ISQDRQMDTSITIRTLVAEPPRLYCWAGGGIVADSQVDAEYQESYDKVSKILPVLSN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory