PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209451 (559 amino acids)

SeqID: 5209451 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209451
MALHERAGKPAQQRDLVNIPKLMSHYYRLSPDVTNDAQKVTFGTSGHRGCAFNKSFNEKH
ILAIVQAVVDHRIEAGIKGPMIVGIDTHALSQAAYVTALEVLTANGVQVIVAKNDEYTPT
PVVSHAIIAANRVQGAGLTYGLNYGLTDGLIITPSHNPPQDGGIKYNPPHGGPAEGGITA
WVEQRANEYLAKQLEGVKRLTYSVAVTTSLIQERDLMAAYVEDLEQVIDMQAIKQAGIRI
GVDPLGGSGIHYWAKIAERYGLDITLVNDRIDPAFGFMPLDKDGKIRMDCSSPYAMAGLL
VHQDAFDICFGNDPDYDRHGIVCPGSGLMNPNHYLAVAIEYLLSHRPQWSADLKIGKTLV
SSAMIDKVCREQSRSLCEVPVGFKWFVEGLADASFAFGGEESAGAAFLRRDGGSWCTDKD
GFILALLAAEILAVTGKTPAKLYAEMVERHGESFYKRIDSPVNPKRKAKFNQLVSEPLNV
SDLGCEAMAGDAILEVLTHAPGNGAAIGGIKVVTEKAWFAARPSGTEALFKLYGESFVSE
AHLEQVLEQAQQMIERLLA