PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209538 (443 amino acids)

SeqID: 5209538 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600502: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209538
MSYDPLLNDFPDGQPWPDSYWATTVSRPARLPALSGRMQTDVAIVGGGFTGLLTAYYLAS
EFNIEARVLEANQIGFGASGRNAGFVLKGSGRMGYSQMAKKWGMETTKGIYGEFTSAVRR
VEQLIEQHEIACDAQPKGYLKIAHNAKAYSTLKGAADFIAEHLGDDAQFLTPSELKESYM
DNHQAYGALRLNDGFGVNPLKLCLGYKRVVQSLGVHLHEESCVREWLKEGPHHRLITDKG
ELIAKQVVSAGNAYTPKRFNQAVDNRYLPILSNIIVTAPLTDAQLEATGLKTHQVVMDTR
RLKYYYRLLSDNRLLFGGRGAISGADAGDPRYGERLKSAMADCFPALAEVTVDHNWTGWI
AAALDDMPHVFSQGNMGYSLGYCGSGVAFSAQAAYRLAQHIAGERLPELPLYQSPLPKFH
FARLRRLGQSAYYQYAWLRDRYS