PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209774 (439 amino acids)

SeqID: 5209774 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [7 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121467: Proton/sodium-glutamate symport protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209774
MAGTQNKKLGLTGKILIGMAGGILTGLLLRSFFPGSEFIEEYITNGLLNVVGSIFISSLQ
MLVVPLVFISLVCGTCSLSDPSSLGRLGGKTIAFYLFTTAIALSMAILVALLVHPGNASL
AAENMQYSVKEAPSLSDVLINLVPRNPIQAMTEGNMLQIIIFAVIFGFAISHIGERGKRV
SALFNDLNEVIMRVVTLIMQLAPYGIFALMGKLALTLGLETFESVVKYFMVVLAVLLVHA
FVSYPVLLKLFSGLSPFTFIRKMRDVQLFAFSTASSNATLPVTLETSEHRLGVDNKVASF
TLPLGATINMDGTAIMQGVATVFIAQVFGIDLTITDYAMVVVTATLASIGTAGVPGVGLI
MLAMVLNQVGLPVEGIALIMGVDRLLDMVRTAVNVTGDSVATVIIAKSENAFNQATFDDP
QAGKTAGSFVDQVNAELKE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory