PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209856 (376 amino acids)

SeqID: 5209856 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 30179893: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209856
MKIVADENMPYVEALFADLGEVVMVDGRTLTQAQVKDADVLLVRSVTKVNKSLLDGCDRL
SFVGSATIGMDHLDLDYLKQRGIFCTNAPGCNAVAVGEYAFNAMLELARRFHNPLKGKTV
GIVGAGNTGTALQKCLEAYGVKTLLNDPLLEQSGDEREFVSLDELIERCDVISLHVPLTR
DGEHPTHYLFDKRRLNALAEDTWLLNCCRGEVIDNRALIEVKQQRSDLKLVLDVWEGEPL
PMPELVPLVEVATPHIAGYSLEGKARGTFMLYQALMAQLGRAVDKSLASLLPPLWSHQLS
PLSVPDEKALLCLVRLVYDLRDDDELFRQRFQNNKGFDLMRKNHKHRREFSALMLANTAG
SDVDWLLELGFSGVGL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory