PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210072 (556 amino acids)

SeqID: 5210072 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 46577264: Glutaminyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210072
MSHVDTEVRPSNFIRNIIDEDLESGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDY
KGLCNLRFDDTNPEKEDIDYVNSIQADVHWLGFQWDGEIRYSSNYFDQLHQYAVELINKG
LAYVCFLNGEQTREYRGTLKEPGKNSPYRDTFVEENLELFEKMRKGEFKEGECALRAKID
MASPFMCMRDPVIYRIRFAHHHQTGDKWCIYPMYDFTHCISDALEDITHSLCTLEFQDNR
RLYDWVLDNLDDFQAPNRTRQYEFSRLNLEYTLMSKRKLNDLVVRGLVSGWDDPRMPTIA
GLRRRGYTPAAIREFCRRIGVTKQENMVEVSMLDACIREELNEHAPRAMAVINPVKVIIE
NYPEGQVEKLSAPAHPTIESMGERELVFGRELYIDADDFREEANKKYKRLIQGKEVRLRN
AYVIKAERCDKDEAGNVTTIYCTYDDQTLGKNPADGRKVKGVIHWVEATSAVPAEFRLYD
RLFNQPNPAAAETVDEVLNPKSLVVKHGLVEPGLVNAEAEKAYQFEREGYFCADSKDSSP
EHLVFNLTVALRDSSN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory