PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210124 (662 amino acids)

SeqID: 5210124 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210124
MAHKPNRMEGEADMSTVSGGRMSFGEDHMKDLHNQLHQESIDNPNAFWGEAAGALAWDKT
FERVLDDSQAPMYRWFSGGQLNTCYNAVDRHVEAGRGEQVAIQYVSPITGTEYGITYNEL
QAQVSRLAGYMASQGVVKGDRVIIYMPMVPETAYAMLACARLGAIHSVVFGGFAANELAT
RIDDATPKMILSASCGVEPSGVVAYKPLLDDALEQASHKVEQCVILNRPQLQADLVDGRD
VDWQGAMADAPNIECQTVEATDPLYILYTSGTTGQPKGVVRDNGGHAVALAWSMKHIYDI
DPGDVFWAASDVGWVVGHSYIVYGPLLVGATTVLFEGKPVGTPDPGIFWRTIAKYNVKSF
FTAPTAIRAIKRDDPEGDYLKDVDLSCLGTLFLAGERCDPDTLHWAEQQLDKPVIDHWWQ
TETGWPVAANLMGTAPVPVKAGSPAKAVPGYDVQVLDEMGDVVAPDQSGNVVIKLPLPPG
TLATLWQNEGRYKESYLSMYPGYYLTGDAGYMDEDGYLYIMSRIDDIINVAGHRLSTGRF
EEVLCQHEAVAEAAVIGVDDKLKGQVPLGLVVLKKGCDLSDEQLYKELIALVREQIGPVA
AFKLVSAVPKLPKTRSGKILRGTMRKIADNQEFKMPATIEDPYTLELVRNALTRMGYADA
HV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory