PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210149 (574 amino acids)

SeqID: 5210149 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210149
MSAVTTFATENQFPLQLSQFDGDTSTPLIEQTIGDYLDQMAASHPDQLAIVMHHQGIRWS
YQEYQSHIDELAAGLLAIGIKPGDRVGIWSPNNIEWCLTQFATAKIGAIMVCINPAYRPE
ELQYALNNVGCRAIICAEKFKSSHYLSMLYELAPELKQCLPGQLESANLPSLEFVIRMGD
EASPGMLNFNHLKRPLTESDRKALKDTAAQLSPFDAINIQFTSGTTGSPKGATLSHHNIL
NNGLLVAKAMRLGLEDRLCIPVPLYHCFGMVLGNLSCISVGASAIYPSDSFDPLTTLEVV
EAERCTALHGVPTMFIAQLEHPEFKRFDLSSLRTGVMAGATCPEEVMRRVQDLMYMKEVL
IGYGQTECSPINNMTEIGSSLEKRVTTVGRALAHTQVKIVDEFGEVLPVGQPGEVCSRGY
CVMQFYWNDAEKTAATIDSEGWLHSGDLGEMDSEGYVKIVGRIKDMIIRGGENIYPREIE
EKLYTHPDVQDAAIFGVKSEKYGEEVCAWIKVQPGASVTEEEIRHFLTEKFAYFKVPRYI
KFVEQYPMTVTGKIQKFKMREMMYQELYEAINCN