PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210687 (437 amino acids)

SeqID: 5210687 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121462: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210687
MEKKKAHDRCATKQGKHMTKSLSTRIFIGLFSGLILGSIIQYFLADVGFFSGTLVEVASG
LGTMFVNMIMMMVVPLVFVSIVCGVLELDDLKSFGRLGGKTFGFYIINTLVAIFAALTVA
LLLKPGLGVDMTGGTGAEITATELPNLMQLIVNIVPSNPVAAFTSGNMLQVIFMALLVGG
VIKAMNGAVPLLQQGFMEGNKLMMKLIGVVMQLAPIGVFALMFKLGATLEASLFLSVVEY
LVVILSLLLLWIFVVYPWAVSLFTPVSAKTFRAKTQEQILFSLSTASSNATIPVTMRTLT
EKLGVKRAVAGFGVPLGATMNMGGVSIYITIAIFFVANSFGAPIAMDQLPALLFSIFLLS
VGAGGVPGGGMVMIGVLIHQMGLPVEAFVIVAALDRLIDMVLTSCNVVGDAAVLTIVDAT
ENAHDEAQEEARQQQTA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory