PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210790 (1516 amino acids)

SeqID: 5210790 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210790
MTSNNQPTNTTQVQTADPLFLQAEHLAQDFSLFPKHSKQSLSQQIKGLLSDDEIQANLKE
LEQLDVDGYVAKVIQPTLDKSRPGAKRVIADLKGKLIVEKHMGPFYSAEIELNFGSRTRR
IGFIAQERSTSNGAWMPEHHLAACTAIRHFAELSMPIVYLIDTPGADAGEIANSQNQAHT
ISKAIAESANVDVPTVGIVIGAGYSGGAIPLAAANILLSLRDGIFNTIQPQGLQSIARKY
NLSWQECAKSVGVSPEELYTSGCIDGIIDFSPSDKDERQHNLRRAIISSIEAVEHAAVQF
VRESKDLREHYDRSLHRFLEPSKNLEALEHHAELSVANNPTMHLNLFGSSYRYLRYLTLR
SRIHSISQEQYGRLSKVSVPEGDLLARIQQEQDKVFQSWLSSPDKLVYDEELNKLWSNFT
AKRDEVSTERNMLTRLILGEPKQNYKKARKALLFNIGWSLYHRWKSNAENNFKGLIHYLE
SLPDEVTQADWPELNQLTVLDVIVHEELREDFIWQCYNILIFNALYDNVVGNLASIAKEA
MMSKSLSRASVDGLLHDSIDRAISKQDTANDKNKFYKWLKYFMSQSNRADLLTKTEQWKS
VGFPQLNDSLFVILTYFFERLLPEYFASEEESSEYTGAINPVRIGRRKDFWNRLTMGYQD
LLIQKVLRDEKRAGKMSWENVIAKFFTEFEELNGDKMSANLLNFPGFRLSIEDALDKGIR
PCGLITGTADFEHHGQTMRVGVAVSNTAFQAGAFDMASAEKFSALLIECAKRKLPVICFI
SSGGMQTKEGAAALFSMAVVNDRITRFVRDNELPVLMFGFGDCTGGAQASFVTHPLVQTY
YFSGTNMPFAGQMVVPAYLPSTSTLSNYLSKVPGAMNALVTNPFSDTIDDQLSSIDPLMP
KPTAKVVDVIGNAISTLVPEMLITEEELVQDDPRQLMKPIDKVLVHARGCTAVKLIRKAH
DNNIKVVLVASDPDMTSVPADMLNENDKLVCIGGNTSDESYLNAYSVLKVAEYEQVDALH
PGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQSQNVPVVPGSHGILT
NAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVQRPEDMISLFQKTSTEAAAAFGNGDLYL
EKYVTSLRHIEVQLLRDKFGNTKVLGLRDCSVQRNNQKVIEESGSTMLPEELKQQVMEYT
RALGDATDYMGAGTVEFIYNLDANEVYFMEMNTRLQVEHPVTEATSGIDIVSAGFDIAAG
RSIEDLEPQEIGYAIEVRVTAEKAALDSNGVLQLLPHPGMITECVIPERDDIEIISIAGE
GKEVSPYYDSLIAQIICRGESREDVINKLHDYLANQVVIKGIATNIPLLTRILKDGTFNE
GVYDTNYLPRFMAELDIPALIAEMEAAAETVGVDTESLRVGESNELKVLAQGAGIFYTSP
APGEADFVKEGDIVTVDQTLALTEAMKMFSQVTLAGFNRQGAVLYPEDKQYRIERILNSN
GQQVSQGELLFVVSPV