PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210964 (252 amino acids)

SeqID: 5210964 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 136740: Uridine phosphorylase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210964
MSDVFHLGLTKEMLDGATLAIVPGDPERVKRIAELMDNPTFLASHREYTSYLAYIDGKPL
VICSTGIGGPSTSIAVEELAQLGIDTFLRVGTTGAIQPQVNVGDVIVTQASVRLDGASLH
FAPMEFPAVANFECTTAMVAASREAGLEPHIGITASSDTFYPGQERYDTVTGRVTRRFAG
SMKEWQDMGVLNYEMESSTLFTMCATQGWRAACVAGVIVNRTQQEIPDEATMKQTETSAV
SIVVAAAKKLLA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory