PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5211101 (520 amino acids)

SeqID: 5211101 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5211101
MTQTTQSPASATLVEFGQRNLNLEEVVAIAKGAKAQLKESADYQEYIQKGARFIDSLLAE
EGVVYGVTTGYGDSCTVTVGLDLVHELPLHLSRFHGCGMGNILSVMQARAVMACRLSSLA
VGKSGVSYELLKRIETLLNLGITPVIPEEGSVGASGDLTPLSYLAAVLVGEREVIYQGER
RATADVYRELDITPLTLRPKEGLALMNGTAVMTALACLAYDRAQYLNRLASRITAMASLT
LKGNSNHFDDILFAAKPHPGQNQIAAWIREDLNHHEHPRNSDRLQDRYSIRCAPHIIGVL
QDALPFMRQFIETELNSANDNPIVDGEGEHVLHGGHFYGGHIGFVMDSMKNAIANIADLI
DRQMALVMDPKFNNGLPANLSGAQGSRKAINHGFKAVQIGVSAWTAEALKNTMPASVFSR
STECHNQDKVSMGTIAARDCMRVLQLTEQVAAAALLAMTQGIHLRIAQGELCHASLTTSV
AKTLDQVSADFELLTEDSPLETVLRQTVDKIQQGLWEVCH