PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5211138 (469 amino acids)

SeqID: 5211138 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 14548063: Glutamine synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5211138
MSVESVLQQLEELEVKFVDLRFTDTKGKEQHVSIPAHQVDADFFEDGKMFDGSSIAGWKG
INESDMVLMPDPTTFVLDPFTEETTALIRCDILEPGTMTGYDRDPRSIAKKAEEYMVSTG
IADTVLIGPEPEFFLFDDVKFGTDMSGCFVKLDAKEAAWNSGTHYEDGNTGHRPFVKGGY
FPVAPVDSSQDLRSAMCLVLEEMGQVVEAHHHEVATAGQNEIATRFNKLTEKADEIQILK
YVVHNMAHAYGKTATFMPKPIVGDNGSGMHVHQSLAKDGVNLFSGDKYAGLSETALYYIG
GIIKHARALNAFTNPSTNSYKRLVPHFEAPVMLAYSARNRSASIRIPVVPSPKARRIETR
FPDPTANPYLAFAALLMAGLDGIQNKIHPGEAMDKDLYDLPAEEAAEIPQVATSLENALE
NLDADREFLTKGGVFSDDFIDSYIALKTAEAEKVARTTHPAEFELYYSL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory