PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5211158 (506 amino acids)

SeqID: 5211158 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595944: probable aldehyde dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5211158
MIYSKPGTTDAIVNFNSRYDNFIGGQWVAPVGGEYFDNRSPVDGQVFCQVARSDERDIEL
ALDAAHAAKDAWGKTSVTERSNLLLKIADRVEQNLEFLAVAETWENGKAVRETLNADLPL
FVDHFRYFAGCIRAQEGSAADIDNNTVSYHFPEPLGVVGQIIPWNFPLLMAAWKIAPALA
AGNCIVLKPAEQTPVSILVMVELIQDLLPAGVLNIVNGFGTEAGQALAVSKRIAKLAFTG
STQIGHHILKCAAESLIPSTVELGGKSPNIYFADVMEQEDEYLDKAVEGMLLAFFNQGEV
CTCPSRVLIAESIYDKFIDKVIARAKTIKQGNPLDTDTQVGAQASQEQFDKILSYLEIGR
NEGAEVLIGGTSCQLSGDQSSGFYIEPTILKGHNKMRVFQEEIFGPVISVTTFKDEAEAL
AIANDTEYGLGAGVWTRDMNRAQRMGRGIQAGRVWINCYHAYPAHAAFGGYKKSGIGRET
HKMMLSHYQNTKNLLVSYDVNPLGFF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory