PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5211345 (556 amino acids)

SeqID: 5211345 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 123765: Urocanate hydratase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5211345
MDKRHDPSRRIIAPHGTTLSCKSWLTEAPMRMLMNNLHPDVAERPEDLVVYGGIGRAARD
WQCYDKIVEVLQRLEEDETLLVQSGKPVGVFKTHSNAPRVIIANSNLVPHWANWEHFNEL
DKKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVAMAKQHFGGDASGKWILTGGLGGMGGA
QPLAGTMAGYSVLACEVDETRIDFRLRTRYVDKKATSLDEALAMIDEANKSGKPVSVGLL
ANAADIFAELVERGITPDVVTDQTSAHDPLNGYLPQGWTLEYAAEMRKQDEAAVVKAAKQ
SMAVQVKAMLALQAAGAATTDYGNNIRQMAFEEGVENAFDFPGFVPAYVRPLFCEGIGPF
RWAALSGDPEDIYKTDAKVKELIPDNPHLHNWLDMARERIAFQGLPARICWVGLKDRARL
AKAFNEMVKNGELSAPIVIGRDHLDSGSVASPNRETESMLDGSDAVSDWPLMNALLNTAS
GATWVSLHHGGGVGMGFSQHSGVVIVADGTDEAEARLGRVLWNDPATGVMRHADAGYEIA
KQCAKEQGLDLPMLDL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory