PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6936040 (217 amino acids)

SeqID: 6936040 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 15596672: heme exporter protein CcmA[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6936040
MTLPTKTAHSLVSAEKLTCIREERILFDELSFSVNEGDIIQIEGPNGAGKTSLLRILAGL
SRPYAGSVFYRDEEIGRCRDEFNEDLLYLGHLAGVKSELTAEENLNFNLRLSGYDDFDTG
EVLAKVNLKGFEEALAGHLSAGQHRRTALARLWHSNCKVWILDEPFTAIDKRGVAELEQL
FLKHADNGGCVILTTHQDMGLIKDERLRKLKLEYRFV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory