Running PSORTb v3.0 on 6936392 (1517 amino acids)
SeqID: 6936392 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Cytoplasmic [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Cytoplasmic 9.26 Periplasmic 0.48 CytoplasmicMembrane 0.24 OuterMembrane 0.01 Extracellular 0.01 Final Prediction: Cytoplasmic 9.26 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
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>6936392 MTTNKQPKNMTQAQKPDPLFLQAEHLAKDFSLFPEHSKQSLSEEIKGLLDDAAIQTNLKS LAKLDVDGYVAKVIQPTQDKNRPGAKRIIADLKGKVITETHMGSFYSAEVDLNFGSRTRR IGFVAQERTTANGAWMPEHHLAACKAIRHFAELSMPIVYLIDTPGADAGEIANSNNQAHS ISKAIAESANVDVPTVGIVIGAGYSGGAIPLAAANILLSLRDGIFNTIQPQGLQSIARKY NLSWQECAKSVGVSPEELYNAGCIDGIIDFSPSDRDERQHNLRRAIISSIEAVERAAVNF VKESKDLREHYERSLTRFLNPSNSLKALESTADMAVASSPTMHLNLFGSAYRYLRYLTLR SRIHSISMEQYGRLSKVSVPEGDLLERIQKEQEKVFQAWLSAPDKVVYDEELSKLWNNFV NKRSEVSTERNMLTRLILGEPKENYKKAKKALLFNIGWSLYHRWKSNAANNFKGLIHYLE TLPAEVTEANWPELNNLTVLDVVVNKELREDFIWQCYNILIFNALYDNVVGSLASIAKEA MMSKSLSRASVDSLLHKAIDRALSTQDIANDKSKFYKWLKYFMSQSNRAELLTKTEQWKS VGFPQLNDSLFVILTYFFERLLPEYFDSEDDTGKYTGAINPVRIGRRKDFWNRLTMGYQD LLIQKVLRDEKKAGKMTWENVINKFFTNFDELNGDKMTANLLNFPGFRLSIEDALDKGIR PCGLITGMADFEHKGASLKVGIAVSNTAFQAGAFDMASAEKFSALLIECAKRHMPVICFI SSGGMQTKEGAAALFSMAVVNDRITRFIRDNELPVLMFGFGDCTGGAQASFVTHPLVQTY YLSGTNMPFAGQMVVPAYLPSTSTLSNYLSKVPGAMNGLVYNPFSDTLDSQLSSIDPLMP MPTQKIEEVIKGAISTLVPEAQVVDEEIRQDDPRALMKPIDKVLVHARGCTAVKLIRKAH DNNINVVLVASDPDMTAVPADMLKENDKLVCLGGNTSDESYLNAYSVLKVAEYENVDALH PGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHGILS NAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIPLFMKTSTEAAAAFGNGDLYL EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVIEESGSTMLPPELKQQVMAYT KSLGDAVDYMGAGTVEFIYNLDANEVYFMEMNTRLQVEHPVTEATSGIDIVSAQFDIAAG RSIEDLEPQEIGYAMEVRVTAEKAALDSNGVLQLVPNPGKITECVMPERDDVEIISIAAE GKEVSPYYDSLIAQIIIRGESREDVVTKMYDYLDSVVIKGIATNIPLLKRILKDATFNEG VYDTNYLPRLMAELDIPELIAEMEAAAETQGVDTESLRVGDSNELKVLAQGAGIFYSSPA PGEPEFVREGDIVTTDTTLALTEAMKMFSQVTLASFNRKGAVLYPEDKKYRIERILNTNG QQVSQGDLLFVVSPVED
Lawrence Berkeley National Laboratory