PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6936677 (744 amino acids)

SeqID: 6936677 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1172699: Phosphoenolpyruvate-protein phosphotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6936677
MLNTLRDITQSVASAHTLELALESLVGQTKAAMETECCSIYILEQQQLVLSATDGLEKSA
VGRVKMPLSEGLVGLVAQREEAINLADAHLHPRFKLFPEANEDEYRAFLAAPIIYQKQLL
GVIVVQQAKARQFNEGEEAFLMTLAAQLAMAIRGLKRRAEVHSLDHQVLFTGTSASTGVA
IAHALVIGGEISLEQPEACATDVDAEVNRLRLAMGRSRDALTALAQKFENDHDDELSSIF
TSLQSLLEDASLGGEYQREVLAGWSAETAVSRVSLRYVAQFETMEDAYLRERASDIRDLG
QRVLRQLIEPGRMMLDPDKPVILVTREADTSMLAEFPRQKLAGIVTEAGGVNSHAAILAR
ALGVPAIMGVEQVLQANLDKQLLVLNASRGILMVSPSPTVVDEYRNLISAQKALDRQYAE
ELKEPALTLDGHRIHLYLNAGLMSGVSSEIADGADGVGLYRTEIPFMLQQRFPSESEQIK
VYRSVLQSAAGRPVVMRTLDVGGDKPLPYFPISEENPFLGWRGIRLSLDHPELFLVQLRA
MLQAAGDTDNLKILLPMVSSLDEIDEALLYLDQAFSELRADVNPSLARPPVGVMLEVPAL
LYQLREVAQRVEFVSVGSNDLTQYLLAVDRNNPRVSSLYDSYHPGVLRALQLALQECRQH
KLDVSVCGELAGEPMGALLLVAMGYDELSMNQGSLAKINYLLRRVERSELEQLLALVMQM
SNGQDVRELVREYLDTRELSSILG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory