PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6937021 (422 amino acids)

SeqID: 6937021 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6937021
MSVLKSIIEANKRGEQRGIFAVCSAQPLVLRAALRHGVETGSPVLIEATANQVNQFGGYT
GMVPADFIRFVESLAEAEGLPRERLLFGGDHLGPVAWKHLPADEAMANAEAMVRAFVNAG
FEKIHLDASMGCQGEAEPLGDSLIAERAARLCKAAEEAACGRPLCYVIGTEVPPPGGVAS
LHALEVTPVPAIEQTVAAHRAAFDAAGLSDEVWQRVIALVVQPGVEFGHSDIHQYNSSLL
DAQRRFIRCQPGLVYEAHSTDYQLPEHYKSLVADHFAILKVGPELTFALREALFALDHIE
ALLLEPSKRAGLRALCEDKMQADPKFWQHFYTDPLALDWQLGFSYSDRIRYYWPELSQAI
DTLLFNLKDPIPLPLISQYLPLQYPKVLRQALPATALSLVLDHISLVLERYEDACQLSAI
KG