PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6937361 (304 amino acids)

SeqID: 6937361 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 66774113: Dihydrodipicolinate synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6937361
MKVNWQGVYPAISTQFNEDGSINFASNTRMLEQLILDGINGIIALGTIGENASLSADEKR
AFLKHTVETVAGRIPVIAGCTENTAQLAIQYVQDVEAIGVDGVMLLPAVVYRGTDREVLT
HYQMVARATRLPIMIYNNPVSYGVDINLDMTAILANEPNIVAIKESTTDTRRLTELQSRF
GDRFTLFCGVDDIALESLLLGATGWISGLTNVFPRESVTLYKLARAGRMEEAREIYRWFM
PLLRLDTIPTLVQCIKFAEQLAGRGSEQVRMPRMTLIGDERAYVENVVGEAMANRIDLSK
YNLD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory