PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6938103 (336 amino acids)

SeqID: 6938103 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600647: oxidoreductase Rmd[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6938103
MTILVTGGAGYIGTHTVVALQQAGMEVLVLDNLSNACVEALNRVEQITGQAVPFVQGDIL
DKPLLMKIFMDNDIEAVIHFAGLKAVGESVAQPLRYYENNVTGTLVLCQVMAEFNVKQLV
FSSSATVYGDPASLPITEDFPTGATNPYGQSKLMVEHILADLHHSDPSWNIARLRYFNPV
GAHESGLIGEDPNDIPNNLMPFISQVAVGKREKLSIFGNDYPTHDGTGVRDYIHVVDLAD
GHLKALEKLRTQPGLVTYNLGTGQGYSVLDMVKAFEKASGKAVPYEIAPRRPGDIAACYA
DPGKATKELGWKAKLSVDEMAASSWRWQSGNPNGYR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory