PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6938343 (336 amino acids)

SeqID: 6938343 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596099: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6938343
MKADFRSDTVTQPTAAMRQAMSQAQVGDDVYGDDPTVNRLEAMAAEMLGFDAALFTSSGT
QANLLALMSHCERGDEYICGQDAHNYRFEGGGAAVLGSIQPQPLLNQADGTIALGDIEAA
IKPDDVHYARTRLLSLENTIGGKVLPMGYLANAQALAFNRGLKIHLDGARLANAAVALNK
PMAEIAGHFDSVSLCLSKGLCAPVGSLLLGDDRLIKKARRWRKMLGGGMRQAGILAAAGI
IALESQWQRLAEDHDNAALLGRELSMIDGFEVNTASIQTNMVFARVAEHIDIKHVAAELA
SLGFIISPAKNLRLVTHNDISRDAVLAFVAALKSAL