PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6939451 (451 amino acids)

SeqID: 6939451 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131372: glutathione oxidoreductase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6939451
MAQHYDYICLGAGSGGIASANRAAIRGAKVLLIEAKHVGGTCVNVGCVPKKVMWYGAQVA
EAMHLYAKDYGFDVDVKNFDWNTLVASREAYIDRVHAAYGRGFASNGVTLVEGYGKFKNN
NTIEVNGEEYTADHILIATGGRPSIPNIPGAEHGIDSNGFFALSEQPKRVVVVGAGYIAV
EIAGVLHALGSETHLCVRKHSPLRSFDPMLSQALTDAMAENGPTLHTNAVPKAVEKNADG
SLTLQLENGESITVDCLIWAIGREPATDKIGLENTDVTLDDKGYVIVDEWQQTSAKGIYC
VGDIMAGGIELTPVAVKAGRFLSERLFGGQPNAKMDYSLVPTVVFSHPPIGTMGLSEPDA
KAQYGEDQVKVYTSTFTSMYTAVTAHRQPCKMKLVCAGPDEKVVGIHGIGFGMDEILQGF
GVAIKMGATKADFDAVVAIHPTGAEEFVTMR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory