PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7023199 (890 amino acids)

SeqID: 7023199 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7023199
MSDCQLQLRRRAVSLLERQTKRNVAVLEAYRKHVAERAAEGVVPKPLDAHQVAELVKLVQ
NPPAGEEAVILDLLENRIPPGVDEAAYVKAAFLDAVAKGAATSPILSAERATELLGTMQG
GYNIEPLIAQLDNPALAPLAAKALSHTLLMFDSFHDVVEKMEAGNAYAKQVVEAWANADW
YLSRPKLADKVTLTVFKVSGETNTDDLSPAPDAWSRPDIPLHALAMLKNARDGIEPDVPG
SVGPIKKLEELKTKGFPLVYVGDVVGTGSSRKSATNSVLWFMGDDIPFVPNKRAGGFCLG
GKIAPIFFNTMEDAGALPIELDVSKMEMGDVIDIYPYAGQVKRHGTEEVISEFSLKTDVL
LDEVRAGGRIPLIIGRGLTDKARSVLGLPASDVFVRPQDIADSGKGYTLAQKMVGKACGV
AGVRPGQYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLTMQSFCHTAAYPKPVDVN
THHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLV
AFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLKAIEMGLLTVEKKGKINIFS
GRVLEIEGLETLKVEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNITMLKWMIAEGY
GDRRTIERRIKGMEEWLANPELMSADKDAEYAAVIEIDLNEIKEPILCAPNDPDDAVLLS
SVAQTQIDEVFVGSCMTNIGHFRATGKMLDKFAKTLPTRLWIAPPTKMDKDQLTEEGYYG
IFGRVGARIEIPGCSLCMGNQARVAEGATVVSTSTRNFPNRLGTGANVYLASAELAAVAA
LLGRLPTVEEYQEYAKELDATAADTYRYLNFDQIDSYTKKASQVIFQSAV