PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7024305 (748 amino acids)

SeqID: 7024305 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7024305
MSTFTAVENISRRDVLKLFGAVGGGLALGASGLSWSPMALAQDQQARLNLFIAIGEDDKV
YLTCHRSEMGQGIRTGILQILAEELEADWDKIVPIQGLADKRYASQNTDGSRSIRENYDR
MREMGAMARTMLEQAAAARWKVPVSEVQAKDHQVLHAKSGRAARFGELALDAAGLPLPTA
DSLRLKAVKDFKQIGASRQIVDMQAMLTGKAVYGYDIQVDNMLYASIMRPPVLGSDVASL
DDSAARKVAGVVDVYRLPTSKGAPAFQALGGVAVVATNTWSALQGRKALQVSWTQSANSS
HDSKTYLQELVDKVQAPGKVVRQVGDEVKAWPKDDTLKAIYTVPYLIHSSIEPPVATANV
TEKGCEIWASTQTPQSTQQNVAVALGIAEDAVKVNVTLLGGGFGRKSKPDFSVEAALLSK
QFKRPVKVSWSREDEIQNGYYHAISAQCYQALFDANNKPTALLARTGFPSISSTFAEGVE
YPSGGELDLGFVDVPFALANLRYEAVKASAHSRIGWMRSVCNIQHGFGVGSFVDEMAHKA
KLSCPDMWRSLLGQARRETFENQGFKYGNYGEDLTRHPVDVGRYLKVIEAVEQAQAKAPK
AGKNQGWGFAVHRSFVSVVAVAMRVEVGEDKQLKVLNAIAAIDAGTVVNPDRVKAQTEGA
IVFGLSLALMGEISYQQGKVMQSNFHDYPLLRLPQVPEMEVIIIDSDAPPAGVGEPGVPP
VAPSLTNAIFAATGLRIRDLPVNKQLKV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory