PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7024559 (1013 amino acids)

SeqID: 7024559 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7024559
MLPLLSHQQTLEPVYLAYLDALAQSGYAGDIDKRYSARLVQATDNSVYQFLPQAVLYPKH
QKDIQIALSLAAKAEFAGVTFSARGGGTGTNGQSLTHGLILDVSRYMNRVLEVNHEQGWV
RVEAGVVKDALNDALRPHGYFFSPDLSTSNRATIGGMINTDASGAGSLVYGKTSDHVLAL
RSILIDGSVFDTRPLDAGLLCNPDNVSDNPLGQKLISAIAEVCREKRALIEQQFPKLNRF
LTGYDLKNVWNNGLTQFDLSRILTGSEGTLAVITEAKLNITPLPSERAMVNIKYDSFQSA
LRHAPSLVAARATVVETVDSKVLNLAREDIVWHSVSDLIQEVPGKVIDGLNMVEFAGDAV
EVSEKLAALEAVLTEQINRGECGVVGYQVTQDKASIEKIYGMRKKAVGLLGATKGRRKPI
AFAEDTAVPPEMLADYIMEFRALLDSHNLQYGMFGHVDAGVLHVRPALDMCDVEDEKLLR
VISDQVAALTLKYGGLMWGEHGKGVRGEYGPSVFGDELYGVLQDIKGLFDPDNRLNPGKL
VAPKQAGGLCFDVDSTKRGKFDRQIPVEVRDAYPDVMNCNGNGLCFNYSSFSPMCPSFKV
TGDRVQSPKGRAGLMREWLRLLESEGVDVNALARAKPLGILQRMQNTINAKRDYDYSHEV
MESLKGCLACKACSSQCPVKVDVPKFRAQFFNIYYQRYLRPAKDYLVAGIEDSLPIMAAA
PRLTNFASQNPLSQWVIKKAIGYVDAPALSVPTLKQRLDGHASRGYDLAALQAIPADERA
KFVLVVQDPFNSFYDAGLVYRFVQLIETLGLKPVLLPFKPNGKPTHIKGFLDKFAKTAQS
SADFLNQVHKLGMPMVGIDPALVLCYRDEYKEILGANRGAFEVKLANEWLLSILQDIPTK
AMQDKQFTWFSHCTESTAKPNTANEWSKIFTHFGAKLTAVNLGCCGMAGTYGHEAENLER
SKTLFDMSWKDTLSRIDASQVLVSGYSCRSQVKRFAGYKPKHPLEALLELVKA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory