PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7025757 (464 amino acids)

SeqID: 7025757 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7025757
MAYQHNHEATGSQVHAHKADIFCRDETRVDWHSKALWVLREKRDRAAGSLPEWEQLRQLG
SEIKLHTLTNLAQYLETFEQNCLANGIKVHWAKDGAEHNRIVHDILASHKVKKLVKSKSM
LTEECHLNPYLEQRGIEVIDTDLGERIIQLAKMPPSHIVVPAIHMKKEEVGDLFHDKLGT
KAGESDPLYLTRAARAHLREQFLSADAAMTGVNMAIADKGAVVVCTNEGNADMGANLPKL
QLHSMGIDKIVPDIDSAAVLLRTLARNATGQPVTTYSAFYRGPQVDGEMHVIIVDNGRTE
MLKDKILAESLKCIRCGGCLNTCPVYRRSGGYSYNYTIPGPIGIAVGAKHDDTNSIAWAC
TLCGSCTYVCPTKVPLDKIIFHHRRLKAEAGQLPYGKNGYMPLVGKFMASTTLLNCSMGA
ARTALRILPGSLLKPFSGAWGKYRELPVAPNSSFEAWFKKHRSL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory