PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7025821 (423 amino acids)

SeqID: 7025821 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 54042335: Inner membrane transport protein yhaO]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7025821
MDARLTAAQWKEDTRFDSTDWGWIIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYP
AMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGGLYFIMLVIWVFVYSTAITND
SASFLQSFGATTSLLSENPFYGLALICGLVALASRGENLLFKISTFMVLTKLGVVAVLGL
MMVDKWDINNIGSVPSTGDWLKDAIVMLPFTLTSILFIQSLSPMVISYRSREKSLAVARF
KAMRAMNIAFGVLFVVVFFYAVSFTLAMGHEQAVRASHENISALAMVAQGMPGQTLKLLS
LTLNIFAVMTAYFGVYLGFREACQGLTMNMLRRVMPEERINKSLVGYGIMIFTILLSWGA
IVLNAPVLSFTSICSPIFGLVGCLIPAYLVYQVPALHKYKGVSLYIIIVTGLLLCISPLL
AFS