PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7026296 (1517 amino acids)

SeqID: 7026296 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7026296
MTSNNQPTHMTQAQTPDPLFLQAEHLAKDFSLFPKHSKQSLSDEIKGLLNDDAIQANLKD
LASLDVDGYVAKVIQPTQDKGRPGAKRIIADLKGRLITETHLGSFYSAEVELNFGSRTRR
IGFIAQERTTANGAWMPEHHYAACKAIRHFAELSMPIVYLIDTPGADAGEVANSQNQAHS
ISKAIAESANVDVPTVGIVIGAGYSGGAIPLAAANILLSLRDGIFNTIQPQGLQSIARKY
NLSWQECAKSVGVSPEELYTAGCIDGIIDFSPGDRDERQHNLRRAIISSIEAVERAAINF
VRESKDLREHYDRSLARFLSPSKNLMALELNAELAVATSPTNHHNLFGSAYRYLRYLTLR
SRIHSISQEQYGRLSRVSVPEGDLLARIQQEQDRVFQAWLSSPDKLVYDEDLNKLWANFI
AKRDEVSTERNMLTRLILGEPKENYKKARKALLFNIGWSLYHRWKSNAANNFKGLIQHLE
NLPKSVTQAKWPELNQLTVLDVVVNDELREDFIWQCHNILIFNSLYDNVVGSLASIAKEA
MMAKSLSRNSVNNLLHKSIDHALSTQDTANDKAKFYKWLKYFMGQSNRADLLVRVEQWKS
VGFPQLNDSLFVILTYFFERLLPEYFDSESDNSKYTGAINPVRIGRRKDFWNRLTMGYQD
LLIQKVLRDEKRTGKMTWENVIKQFFTHFEEINGDKMSANLLNFPGFRLSIEDALDKGIR
PCGLITGIADFKEKGQKVRVGVAVSNTAFQAGAFDMASAEKFSALLIECAKRKLPVVCFI
SSGGMQTKEGAAALFSMAVVNDRITRFIRDNELPVLMFGFGDCTGGAQASFVTHPLVQTY
YLSGTNMPFAGQMVVPAYLPSTSTLSNYLSKVPGAMAGLVHNPFSETLDNQLASIDPLMP
MPTAKISDVIINALSTLVVEAPVEEEVIVQNDPRKLMKPINKVLVHARGCTAVKLIRKAH
DNDINVVLVASDPDMTAVPADMLKDSDKLVCLGGNTSDESYLNAYSVLKVAEYEQVDALH
PGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQSQNVPVVPGSHGILT
NAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTSTEAAAAFGNGDLYL
EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESGSTMLPEELKKQVLDYT
RALGDATDYMGAGTVEFIYNLDANEVYFMEMNTRLQVEHPVTEATSGIDIVSAQFDIAAG
RSIENLEPKEIGYAMEVRVTAEKAALDSHGVLQLIPNPGKITECVFPDHPDVEIISIAAA
GKEVSPYYDSLIAQVIMRGENREDVIAKLHAYLDSVVLKGIATNIPLLKLILSDGTFKEG
VYDTNYLPRFMAELDIPALIAEMEAAAETVGVDTESLRVGESNELKVLAQGAGIFYTSPA
PGEPDFVKEGDIVTADQTLALTEAMKMFSQVNLAGFNRQGAVLYPEDKKYRIERILNSNG
QQVSQGDLLFVVSPVED