PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7026313 (656 amino acids)

SeqID: 7026313 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2829633: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7026313
MSKPLLEVSACYRSFQAGEQQLTVLKDINLSIARGEMVAIVGASGSGKSTLMNILGCLDK
PSKGSYFIDGQDTSQMDVDELAKLRREHFGFIFQRYHLLGDLNAVGNVEVPAVYAGKDRL
ERRERAESLLSRLGLGERLDHKPNQLSGGQQQRVSVARALMNGGDVILADEPTGALDSHS
GEEMMRLLQELHREGQTIIIVTHDMHVAQHADRIIEIKDGVIISDEPNPASNIAAAPKTE
VIPAKTKARARVAAWDRYAEALKMALLAMSTHRLRTFLTMLGIIIGIASVVSVVALGEGS
QREILKSISSMGTNTIDIRPGSGFGDRRSARVRTLTASDANALKNLPYVDSVTPSIGSSA
TVRYGNKAVTATVNGVGPEFFRVRGYELAQGQFWDDDSVNALAQDAVIDENTRKQLFPNS
SGAMNSAIGEVIFLGDLPVRIIGVTQPKESAFGNSDALNVWVPYTTVSGRMVGKKYLDGI
TVRLDESVPSNAAEQGIISLLKMRHGTQDFFTINTDTIRQNIEKTTATMTLLISAIAVIS
LVVGGIGVMNIMLVSVTERTREIGVRMAVGARQSDILRQFLIEAVLVCLCGGALGVALAY
LIGVVFAQAGGSFQMIYSTTSIVAAFACSTLIGVLFGFLPARNAARLDPVDALARE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory