PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7026471 (797 amino acids)

SeqID: 7026471 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7026471
MARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKTTNFLYKLLSLRDSNQ
LWQEELQVLISYQQGLIEQLLSNEQARDLRERLTTDKAQLISLLSLDSRNDYQISHVVSF
GERWSARLMAALLRESGVAASHVDACSILVADEAAVPQIRVQESRTKVQTLLAAHPNERL
VITGFICANERGDTLLLGRNGSDFSASLIASLADIERVTIWTDVEGVFNADPNKINDAKL
LKSMSLAEADRLARLGSPVLHSRTLQPLFNTEVSLAVRSSYASHTDFTLIAPHSSSASAP
VVTNLNAVVLFGFKIAGDVASLLEQLVEAGLTPLAHWLSAHQRLELAYTAENQKQVQKLL
DAQAEALGIKDLQINTELGLVALVSADAEHYRRSFARLLSRDAKPLFSGDLSLVTLVPQS
QVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWVKLFKSVSPSLNQELEARVELVGLVS
SSKALIKSTAVDLENWQQEFDAEATPWQYEHLFEQLEQLNCDELIALDISASASLTLQYP
EFFERGIHMVSANKLAGSGPLPFYRELKEQLGYRRLFWRYNASCGAGLPIQHALNDLRNS
GDSVEAVGGIFSGTLCWLFEKYDTSKPFSELVIEARGLGITEPDPRDDLSGRDMQRKLLI
LAREIGLEIELEDIELRSLVPAHLADIPLEQFLARIGELDDELQQQYGAAAEQNKVLRYV
ASLDNSGATLKAEVGLQWIDANHPYANLTPGDNVFVIRSAFYQGNPLIIRGPGAGREVTA
AAVQSDLTQICRDLLQE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory