PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7026695 (397 amino acids)

SeqID: 7026695 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595990: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7026695
MSKNPFPPQIKVAATYMRGGTSKGVFFRLQDLPEAAQVPGPARDALLLRVIGSPDPYGKQ
IDGMGGATSSTSKTVILSKSTQADHDVDYLFGQVSIDKPFVDWSGNCGNLTAAVGAFAIS
NGLIDAERIPQNGICTVRIWQANIAKTIIAHVPITNGEVQETGDFELDGVTFPAAEVQIE
FMNPAADEDGDSGSMFPTGNLVDVLEVPGIGSFNATMINAGIPTIFINAEDLGYTGTELQ
DDINSDNAALAKFETIRAHGAVRMGLIKHIDEAASRQHTPKVAFVAKPTSYVSSSGKAVA
AEEIDLLVRALSMGKLHHAMMGTAAVAIGTAAAIPGTLVNLAAGGGEKEAVRFGHPSGTL
RVGAQATLENGEWTVIKAIMSRSARVLMEGFVRVPTA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory