PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8499218 (557 amino acids)

SeqID: 8499218 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597498: probable non-ribosomal peptide synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8499218
MTYTTKFTAKDYKEFCATFRIDAPDTFNFAFDVLDPIAAADPGRLCIAHVDDAGVRRDYT
FAWMAEASAKLANALRLRGIRKGDRVMLVLYRRIEFWVSMLALHRLGAVAIPAPAQLTPK
DIVFRVERAKTRCVIVDHSITERVEAARPDCPGLAVCVQVGGDALPRGWVDYDTIFTPAE
ARFPRPESPLEFAGGEDPLLIFFSSGTTGMPKMVEHVHTYPLGHLLTGMYWHDLVPGDLH
LTLADTGWGKAVWGKFYGQWMAGASVFVYDFRGKFEPAALLDVLAAHAVTTFCAPPTVYR
FLVRQDLSAYDLSKLRHCTTAGELLNDSVFHDWKAATGLEIHEGYGQTETTLQIATLPCM
TPKAGSIGRPMPGWDVVLQDAAGNICPPGEEGEICVRVAEGLPVGLFRGYLEEPEKTASV
MFGGYYHTGDKAWMDEDGYYWFLGRVDDLIKSSGYRIGPFEVESALVAHPAVVEAAVTGV
PDPLRGQAVKATVVLAAGYTASDALTKELQDHVKKVTAPYKYPRIIDYVAELPKTISGKI
KRAEIRERDQQASGPGA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory