PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8499436 (762 amino acids)

SeqID: 8499436 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 15599563: BifA[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8499436
MKAGSAEETVAPSTGGERIMGDAVADNAANRAAPWWRPLAAVFADVTERVADQPVVIAVQ
RALALVLPLVTVGAFALMVRHTPFPLLRAALDALFGPAWITMGDALVSGTFGIASLAVLC
AFSGTMAMVYNQRRGGQFVSPVMSAIVVLACFFVVTNPASDMPWRDMFSMDRGLLLAFMV
SVGGAWLFLRLSDVKRLQLPLEAVGHDPVVRDILTVMPAGMLTIVAFGLLRVGLVDSGIP
DLHGALRSGMTRPFIEGGNTLGLGLLYTGLSQVLWFFGAHGPNLLFPIEDAIFAPAGAAN
AAALATGQVPPFVLTKTFFDVFTRMGGSGSTLCLIAAILYASRDSGTRRLALVALLPALC
NVNEPLLFGLPLVMNPVYLIPFLLVPLAQTAAAHAATLLHLVPYTLPDVVWTTPPLLNGY
AATGSVAGSLMQALNLGLGVALYLPFVRASDALRERHGRHILAELLRTASGSEVGPAGRK
CIDRPGEQGRIASSLANDLAAALARNGEVFLEYQPQIRMDGRAHGAEALLRWHHPAYGRI
APPITVALAEDTGIIDRLGMFVLHRACARRVAWTGEVPDGFVMSVNVAPRQLQNPRFDRD
VLAVLARTGLAPHLLELELTESTVLLPDARTVAALRRLRAAGVRVAIDDFGMGHASLRYL
RDFPVDTVKIDRSLTEASHGDVNEHIVRSIVELARSLDITTLVEGVERREQFERFVELGC
LVFQGYLFSRPVRAVQCLEVVSGWGGHAAAPEQAVPDIPKGA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory