PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8499450 (473 amino acids)

SeqID: 8499450 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 118670: Dihydrolipoyl dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8499450
MTPSTRYDMIILGGGPGGSRAAFDAAARGLSVALVDRDGLGGTCLNRGCIPTKLLLGATA
ALPLLETQKKLKGADGHIAFDLPALQQRKDRYVKGTRQALEKRLKAAGIAVYAGEGRVTG
ERQGDADGELAVVAAQADGTTQETRLGWGTLIVATGSTPASFPGLAADGAAVLDSTALLD
VTEAPESLIVVGGGAIGLEMADFFSRFGTRITIVEGMGRLAPTEDAEVGDTLRKVYAREG
WTIHNGRKVASLATVDGHAVLRFEDGEELTASKALLAVGRRPASVGIGLEALGTTLRGPG
WMQTDEWLRAAPHVYAIGDVNGRTLLAHAADHQARYAVRHACGDTAAPYDAGVMPACIYG
HLEAMRVGPTAEELKNAGFSPRVSRSMLIANPIAQAYGTTQGFIKIVWVDGRIRGVTAVG
HGVSHLVTLAAVLAGGSGTATGWTAHDAGNVIFAHPTLDEALEAAIEAPQELA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory