PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8499452 (443 amino acids)

SeqID: 8499452 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597641: glycine cleavage system protein P2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8499452
MPFIPHSPEEVREMLSVIGVQSIEDLFVDIPAEMRPRSFELPLGLSEMQVLAKMEEMAAR
NRTDVVSFLGGGFYSHHIPAAVDALVSRGEFYTAYTPYQPEASQGTLQAIFEYQTAVCRL
LDMDCANASVYDGGSAIFEAMMMAVRATKRRKLVIDEAVSPIWRTMLASYTSNLSLDLVT
VPQVDGRSDMAAMKAAVDTGCAAVVVQNPNFFGVVEDFTDLFAHAKSQKAASVISVYPVM
QSVLKTPGEMGADIAVAEGQSLGQPLSFGGPYLGIMTCTKDMVRQMPGRIVGRTNDTEGR
TGYVLTLQAREQHIRRAKATSNICSNQALCALRTLVHLCLLGPEGLIRTAELSMERARYA
MERLTAIAGVRPLNTAPFGNEFAVRLPIPAFEAVDRLTARGYVPGFPVGRYYAGMDDVLL
VACTEKNSFEQVGILAEMLGGIL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory