PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8499484 (583 amino acids)

SeqID: 8499484 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8499484
MTEPNTSADFPWLASYDAGVPANISYETFPLFTLLDRAAERTPRRTAIAFRNYRISYAKL
RQLAEVMAANLRAQGVRRGDKVSIMLPNLPQTVIAFWAVLKAGGVVVMTNPLYMEKELVH
QIHDSGARFMIALDLVWPKIEPLREKLGIDKYFLTRIGDGLAFPLNFLYAFKAKREGTWR
ELPFDGRHVLPWKTLLKGKVRHSTTTCNPTEDLAVLQYTGGTTGISKGVMLTHHNMSVNV
QQITTILGDARDMDHCFLGLMPYFHVYGLTTCLTLPTALAATIVPFPRYVPRDVLVGIQK
HKPTIFPGAPSIYISLMQQKEVGDYDLTSIRYCISGSAPMPVEHIKRFRELTGAQVIEGF
GLTEASPVTHLNPIHGVSKTGSIGIPFPDTEARIVDMEVGQVPLPAGKVGELIIRGPQVM
KGYWNRPDETANTLRNGWLYTGDIAIMDEDGYFTIVDRKKDMFLVGGYNVYPREIDEVLH
EHPKIKEAVTVGVPHPTRGEMIKAFVVVKPGEKLTKAEVVAHCREKLASYKVPKQVEFRD
DLPKTVVGKVLRRILRTEEEEKLKAELAASPATAAASDDDGAQ